Class: Organism

An organism studied in the dataset.

classDiagram class Organism click Organism href "../Organism/" Organism : NCBITaxID Organism : scientificName Organism : strains

Slots

Name	Cardinality and Range	Description	Inheritance
scientificName	0..1 String	Scientific name of the organism	direct
NCBITaxID	0..1 Integer	NCBI taxonomy ID for the organism	direct
strains	* String	Name of one or more strains of the organism	direct

Usages

used by	used in	type	used
Dataset	species	range	Organism
Plasmid	host	range	Organism
Plasmid	replicates_in	range	Organism

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/brc/brc_schema

Mappings

Mapping Type	Mapped Value
self	brc:Organism
native	brc:Organism

LinkML Source

Direct

name: Organism
description: An organism studied in the dataset.
from_schema: https://w3id.org/brc/brc_schema
attributes:
  scientificName:
    name: scientificName
    description: Scientific name of the organism.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    domain_of:
    - Organism
    range: string
  NCBITaxID:
    name: NCBITaxID
    description: NCBI taxonomy ID for the organism.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    domain_of:
    - Organism
    range: integer
  strains:
    name: strains
    description: Name of one or more strains of the organism.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    domain_of:
    - Organism
    range: string
    multivalued: true

Induced

name: Organism
description: An organism studied in the dataset.
from_schema: https://w3id.org/brc/brc_schema
attributes:
  scientificName:
    name: scientificName
    description: Scientific name of the organism.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    alias: scientificName
    owner: Organism
    domain_of:
    - Organism
    range: string
  NCBITaxID:
    name: NCBITaxID
    description: NCBI taxonomy ID for the organism.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    alias: NCBITaxID
    owner: Organism
    domain_of:
    - Organism
    range: integer
  strains:
    name: strains
    description: Name of one or more strains of the organism.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    alias: strains
    owner: Organism
    domain_of:
    - Organism
    range: string
    multivalued: true