Class: Plasmid

Description of plasmid or other molecular vector features.

classDiagram class Plasmid click Plasmid href "../Plasmid" Plasmid : backbone Plasmid : description Plasmid : host Plasmid --> "0..1" Organism : host click Organism href "../Organism" Plasmid : ori Plasmid : promoters Plasmid : replicates_in Plasmid --> "*" Organism : replicates_in click Organism href "../Organism" Plasmid : selection_markers

Slots

Name	Cardinality and Range	Description	Inheritance
description	0..1 String	Description of the plasmid, including any relevant features not captured in o...	direct
backbone	0..1 String	Name of the backbone of the plasmid, e	direct
host	0..1 Organism	Host organism for the plasmid, e	direct
ori	0..1 String	Origin of replication for the plasmid, e	direct
promoters	* String	Promoters for the plasmid, e	direct
replicates_in	* Organism	Organism(s) in which the plasmid replicates	direct
selection_markers	* String	Selection markers for the plasmid, e	direct

Usages

used by	used in	type	used
Dataset	plasmid_features	range	Plasmid

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/brc/brc_schema

Mappings

Mapping Type	Mapped Value
self	brc:Plasmid
native	brc:Plasmid

LinkML Source

Direct

name: Plasmid
description: Description of plasmid or other molecular vector features.
from_schema: https://w3id.org/brc/brc_schema
attributes:
  description:
    name: description
    description: Description of the plasmid, including any relevant features not captured
      in other fields.
    from_schema: https://w3id.org/brc/brc_schema
    domain_of:
    - Dataset
    - Plasmid
    range: string
  backbone:
    name: backbone
    description: Name of the backbone of the plasmid, e.g., pUC19.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    domain_of:
    - Plasmid
    range: string
  host:
    name: host
    description: Host organism for the plasmid, e.g., E. coli. Includes both the scientific
      name and NCBI Taxonomy ID.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    domain_of:
    - Plasmid
    range: Organism
  ori:
    name: ori
    description: Origin of replication for the plasmid, e.g., ColE1.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    domain_of:
    - Plasmid
    range: string
  promoters:
    name: promoters
    description: Promoters for the plasmid, e.g., T7.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    domain_of:
    - Plasmid
    range: string
    multivalued: true
  replicates_in:
    name: replicates_in
    description: Organism(s) in which the plasmid replicates. Includes both the scientific
      name and NCBI Taxonomy ID.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    domain_of:
    - Plasmid
    range: Organism
    multivalued: true
  selection_markers:
    name: selection_markers
    description: Selection markers for the plasmid, e.g, kan.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    domain_of:
    - Plasmid
    range: string
    multivalued: true

Induced

name: Plasmid
description: Description of plasmid or other molecular vector features.
from_schema: https://w3id.org/brc/brc_schema
attributes:
  description:
    name: description
    description: Description of the plasmid, including any relevant features not captured
      in other fields.
    from_schema: https://w3id.org/brc/brc_schema
    alias: description
    owner: Plasmid
    domain_of:
    - Dataset
    - Plasmid
    range: string
  backbone:
    name: backbone
    description: Name of the backbone of the plasmid, e.g., pUC19.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    alias: backbone
    owner: Plasmid
    domain_of:
    - Plasmid
    range: string
  host:
    name: host
    description: Host organism for the plasmid, e.g., E. coli. Includes both the scientific
      name and NCBI Taxonomy ID.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    alias: host
    owner: Plasmid
    domain_of:
    - Plasmid
    range: Organism
  ori:
    name: ori
    description: Origin of replication for the plasmid, e.g., ColE1.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    alias: ori
    owner: Plasmid
    domain_of:
    - Plasmid
    range: string
  promoters:
    name: promoters
    description: Promoters for the plasmid, e.g., T7.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    alias: promoters
    owner: Plasmid
    domain_of:
    - Plasmid
    range: string
    multivalued: true
  replicates_in:
    name: replicates_in
    description: Organism(s) in which the plasmid replicates. Includes both the scientific
      name and NCBI Taxonomy ID.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    alias: replicates_in
    owner: Plasmid
    domain_of:
    - Plasmid
    range: Organism
    multivalued: true
  selection_markers:
    name: selection_markers
    description: Selection markers for the plasmid, e.g, kan.
    from_schema: https://w3id.org/brc/brc_schema
    rank: 1000
    alias: selection_markers
    owner: Plasmid
    domain_of:
    - Plasmid
    range: string
    multivalued: true