Enum: RepositoryEnum

Repository where the dataset is stored.

URI: brc:RepositoryEnum

Permissible Values

Value	Meaning	Description
AmeriFlux	None	AmeriFlux
Bio-Protocol	ror:04pvg6f08	Bio-Protocol
Dryad	ror:00x6h5n95	Dryad
EDI Data Portal	None	Environmental Data Initiative Data Portal
European Nucleotide Archive	None	European Nucleotide Archive
FigShare	ror:041mxqs23	FigShare
GenBank	None	GenBank
GEO	None	Gene Expression Omnibus
GitHub	None	GitHub
GLBRC Sustainability	None	"Great Lakes Bioenergy Research Center Sustainability Data Catalog"
Iowa State University FigShare	None	Iowa State University FigShare
ICE	None	Inventory of Composable Elements
Illinois Data Bank	None	Illinois Data Bank
iProX	None	Integrated Proteome Resources
JGI Data Portal	None	Joint Genome Institute Data Portal
JGI Gold	None	Joint Genome Institute Genome OnLine Database
JGI Genome Portal	None	Joint Genome Institute Genome Portal
jPOST	None	Japan ProteOme STandard Repository/Database
MassIVE	None	Mass Spectrometry Interactive Virtual Environment
Mendeley Data	ror:01t2a8a42	Mendeley Data
National Microbiome Data Collaborative	ror:05cwx3318	"National Microbiome Data Collaborative"
NCBI BioProject	None	National Center for Biotechnology Information BioProject
NCBI SRA	None	"National Center for Biotechnology Information Sequence Read Archive"
Open Science Framework	None	Open Science Framework
ORNL DAAC	None	"Oak Ridge National Laboratory Distributed Active Archive Center"
OSTI	ror:031478740	Office of Scientific and Technical Information
PanoramaPublic	None	Panorama Public
PedtideAtlas	None	PeptideAtlas
PRIDE	None	PRoteomics IDEntifications database
Princeton Data Commons	None	Princeton Data Commons
Protein Data Bank	None	RCSB Protein Data Bank
The Cambridge Crystallographic Data Centre	ror:00zbfm828	The Cambridge Crystallographic Data Centre
Zenodo	None	Zenodo

Slots

Name	Description
repository	The repository where the dataset is stored

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/brc/brc_schema

LinkML Source

name: RepositoryEnum
description: Repository where the dataset is stored.
from_schema: https://w3id.org/brc/brc_schema
rank: 1000
permissible_values:
  AmeriFlux:
    text: AmeriFlux
    description: AmeriFlux
    in_subset:
    - requires_login
    see_also:
    - https://ameriflux.lbl.gov/
  Bio-Protocol:
    text: Bio-Protocol
    description: Bio-Protocol
    meaning: ror:04pvg6f08
    in_subset:
    - text
    see_also:
    - https://bio-protocol.org/
  Dryad:
    text: Dryad
    description: Dryad
    meaning: ror:00x6h5n95
    in_subset:
    - general_purpose
    see_also:
    - https://datadryad.org/
  EDI Data Portal:
    text: EDI Data Portal
    description: Environmental Data Initiative Data Portal
    see_also:
    - https://portal.edirepository.org/nis/home.jsp
  European Nucleotide Archive:
    text: European Nucleotide Archive
    description: European Nucleotide Archive
    in_subset:
    - sequence
    see_also:
    - https://www.ebi.ac.uk/ena
  FigShare:
    text: FigShare
    description: FigShare
    meaning: ror:041mxqs23
    in_subset:
    - general_purpose
    see_also:
    - https://figshare.com/
  GenBank:
    text: GenBank
    description: GenBank
    in_subset:
    - sequence
    see_also:
    - https://www.ncbi.nlm.nih.gov/genbank/
    - https://bioregistry.io/registry/genbank
  GEO:
    text: GEO
    description: Gene Expression Omnibus
    see_also:
    - https://www.ncbi.nlm.nih.gov/geo/
  GitHub:
    text: GitHub
    description: GitHub
    in_subset:
    - general_purpose
    see_also:
    - https://github.com/
  GLBRC Sustainability:
    text: GLBRC Sustainability
    description: '"Great Lakes Bioenergy Research Center Sustainability Data Catalog"'
    in_subset:
    - requires_login_for_download
    see_also:
    - https://data.sustainability.glbrc.org/
  Iowa State University FigShare:
    text: Iowa State University FigShare
    description: Iowa State University FigShare
    in_subset:
    - general_purpose
    see_also:
    - https://iastate.figshare.com/
  ICE:
    text: ICE
    description: Inventory of Composable Elements
    in_subset:
    - requires_login
    - sequence
    see_also:
    - https://ice.jbei.org/
  Illinois Data Bank:
    text: Illinois Data Bank
    description: Illinois Data Bank
    in_subset:
    - general_purpose
    see_also:
    - https://databank.illinois.edu/
  iProX:
    text: iProX
    description: Integrated Proteome Resources
    comments:
    - Data download requires the IBM Aspera Connect client.
    in_subset:
    - requires_login
    - sequence
    - proteomics
    see_also:
    - http://www.iprox.org/
  JGI Data Portal:
    text: JGI Data Portal
    description: Joint Genome Institute Data Portal
    comments:
    - Some files are archived and may not be immediately available for download.
    in_subset:
    - requires_login_for_download
    - sequence
    see_also:
    - https://data.jgi.doe.gov/
  JGI Gold:
    text: JGI Gold
    description: Joint Genome Institute Genome OnLine Database
    in_subset:
    - sequence
    see_also:
    - https://gold.jgi.doe.gov/
    - https://bioregistry.io/registry/gold
  JGI Genome Portal:
    text: JGI Genome Portal
    description: Joint Genome Institute Genome Portal
    comments:
    - The Genome Portal is reaching end of life and will be replaced by the new application
      JGI Data Portal.
    in_subset:
    - sequence
    - deprecated
    see_also:
    - https://genome.jgi.doe.gov/
  jPOST:
    text: jPOST
    description: Japan ProteOme STandard Repository/Database
    in_subset:
    - sequence
    - proteomics
    see_also:
    - https://jpostdb.org/
  MassIVE:
    text: MassIVE
    description: Mass Spectrometry Interactive Virtual Environment
    in_subset:
    - sequence
    - proteomics
    see_also:
    - https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp
  Mendeley Data:
    text: Mendeley Data
    description: Mendeley Data
    meaning: ror:01t2a8a42
    in_subset:
    - general_purpose
    see_also:
    - https://data.mendeley.com/
  National Microbiome Data Collaborative:
    text: National Microbiome Data Collaborative
    description: '"National Microbiome Data Collaborative"'
    meaning: ror:05cwx3318
    in_subset:
    - sequence
    see_also:
    - https://microbiomedata.org/
  NCBI BioProject:
    text: NCBI BioProject
    description: National Center for Biotechnology Information BioProject
    see_also:
    - https://www.ncbi.nlm.nih.gov/bioproject/
  NCBI SRA:
    text: NCBI SRA
    description: '"National Center for Biotechnology Information Sequence Read Archive"'
    in_subset:
    - sequence
    see_also:
    - https://www.ncbi.nlm.nih.gov/sra/
    - https://bioregistry.io/registry/insdc.sra
  Open Science Framework:
    text: Open Science Framework
    description: Open Science Framework
    in_subset:
    - general_purpose
    - text
    see_also:
    - https://osf.io/
  ORNL DAAC:
    text: ORNL DAAC
    description: '"Oak Ridge National Laboratory Distributed Active Archive Center"'
    in_subset:
    - requires_login_for_download
    see_also:
    - https://daac.ornl.gov/
  OSTI:
    text: OSTI
    description: Office of Scientific and Technical Information
    meaning: ror:031478740
    in_subset:
    - general_purpose
    - text
    see_also:
    - https://www.osti.gov/biblio/
  PanoramaPublic:
    text: PanoramaPublic
    description: Panorama Public
    in_subset:
    - sequence
    - proteomics
    - requires_login_some
    see_also:
    - https://panoramaweb.org/
  PedtideAtlas:
    text: PedtideAtlas
    description: PeptideAtlas
    in_subset:
    - proteomics
    see_also:
    - http://www.peptideatlas.org/
  PRIDE:
    text: PRIDE
    description: PRoteomics IDEntifications database
    in_subset:
    - proteomics
    see_also:
    - https://www.ebi.ac.uk/pride/
  Princeton Data Commons:
    text: Princeton Data Commons
    description: Princeton Data Commons
    in_subset:
    - general_purpose
    see_also:
    - https://datacommons.princeton.edu/
  Protein Data Bank:
    text: Protein Data Bank
    description: RCSB Protein Data Bank
    in_subset:
    - sequence
    - structure
    see_also:
    - https://www.rcsb.org/
  The Cambridge Crystallographic Data Centre:
    text: The Cambridge Crystallographic Data Centre
    description: The Cambridge Crystallographic Data Centre
    meaning: ror:00zbfm828
    in_subset:
    - sequence
    - structure
    - requires_login_some
    see_also:
    - https://www.ccdc.cam.ac.uk/
  Zenodo:
    text: Zenodo
    description: Zenodo
    in_subset:
    - general_purpose
    see_also:
    - https://zenodo.org/